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A

a - Variable in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.VectorValue

a(List<Node>) - Method in class edu.claflin.finder.logic.communities.Communities

AbstractGraph<V,E> - Class in edu.claflin.finder.algo.jungutils

Abstract implementation of the Graph interface.

AbstractGraph() - Constructor for class edu.claflin.finder.algo.jungutils.AbstractGraph

AbstractTypedGraph<V,E> - Class in edu.claflin.finder.algo.jungutils

An abstract class for graphs whose edges all have the same EdgeType.

AbstractTypedGraph(EdgeType) - Constructor for class edu.claflin.finder.algo.jungutils.AbstractTypedGraph

Creates an instance with the specified edge type.

add(int, int, double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.IndexedHeapQueue

add(int, int, double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

Add the given j index, q value pair to the ith tree and heap

add(T) - Method in class edu.claflin.finder.algo.jungutils.MapBinaryHeap

add(T) - Method in class edu.claflin.finder.algo.jungutils.Pair

add(T) - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

Addd a new Tree Node with the given j index and q value

add(T) - Method in class edu.claflin.finder.struct.PrioritySet

Allows additions of items that already has a copy within the set (determined by obj.equals(obj2) ) and their subsequent replacement if they are of lesser value than the new object as determined by the queue's comparator.

add(T, TreeNode<T>) - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

Recursive implementation of add.

addAll(Collection<? extends T>) - Method in class edu.claflin.finder.algo.jungutils.Pair

addCondition(Condition) - Method in class edu.claflin.finder.algo.ArgumentsBundle

Adds a Condition to the conditionsList.

addCondition(Condition) - Method in class edu.claflin.finder.logic.ConditionedGraph

Adds a condition to the graph.

addEdge(int, int, Object) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

addEdge(Edge) - Method in class edu.claflin.finder.logic.Graph

Adds an edge to the Graph.

addEdge(E, Pair<? extends V>) - Method in class edu.claflin.finder.algo.jungutils.AbstractGraph

Adds edge to this graph with the specified endpoints, with the default edge type.

addEdge(E, Pair<? extends V>, EdgeType) - Method in class edu.claflin.finder.algo.jungutils.AbstractGraph

Adds edge to this graph with the specified endpoints and EdgeType.

addEdge(E, Pair<? extends V>, EdgeType) - Method in class edu.claflin.finder.algo.jungutils.SparseGraph

addEdge(E, Pair<? extends V>, EdgeType) - Method in class edu.claflin.finder.algo.jungutils.UndirectedSparseGraph

addEdge(E, Collection<? extends V>) - Method in class edu.claflin.finder.algo.jungutils.AbstractGraph

addEdge(E, Collection<? extends V>) - Method in interface edu.claflin.finder.algo.jungutils.Hypergraph

Adds edge to this graph.

addEdge(E, Collection<? extends V>, EdgeType) - Method in class edu.claflin.finder.algo.jungutils.AbstractGraph

addEdge(E, Collection<? extends V>, EdgeType) - Method in interface edu.claflin.finder.algo.jungutils.Hypergraph

Adds edge to this graph with type edge_type.

addEdge(E, V, V) - Method in class edu.claflin.finder.algo.jungutils.AbstractGraph

addEdge(E, V, V) - Method in interface edu.claflin.finder.algo.jungutils.Graph

Adds edge e to this graph such that it connects vertex v1 to v2.

addEdge(E, V, V, EdgeType) - Method in class edu.claflin.finder.algo.jungutils.AbstractGraph

addEdge(E, V, V, EdgeType) - Method in interface edu.claflin.finder.algo.jungutils.Graph

Adds edge e to this graph such that it connects vertex v1 to v2.

addEdge(String, String, Object) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {

addEdges(List<Edge>) - Method in class edu.claflin.finder.logic.Graph

Adds a list of Edges to the graph.

addEdgesBetweenAllNodesInList(ArrayList<Node>) - Method in class edu.claflin.finder.logic.Graph

Adds edges in between all possible pair combinations of nodes in a list if both nodes involved are present in the graph.

addHeap(int, int, double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

Add the given j index, q value pair to the ith heap.

addNewNode(String) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

Outdated since v3. Replaced by {}

addNode(Node) - Method in class edu.claflin.finder.logic.Graph

Adds a node to the graph.

addNodes(List<Node>) - Method in class edu.claflin.finder.logic.Graph

Adds a list of nodes to the graph.

addOverride - Variable in class edu.claflin.finder.struct.PrioritySet

Boolean indicating if newer elements with a greater compare value should replace others.

addPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.ConditionedGraph

Adds a partial graph to this graph.

addPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.Graph

Adds a partial graph to this graph.

addPropertyChangeListener(PropertyChangeListener) - Method in class edu.claflin.finder.algo.Algorithm

Adds a PropertyChangeListener.

addTree(int, int, double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

Add the given j index, q value pair to the ith tree.

addVertex(V) - Method in interface edu.claflin.finder.algo.jungutils.Hypergraph

Adds vertex to this graph.

addVertex(V) - Method in class edu.claflin.finder.algo.jungutils.SparseGraph

addVertex(V) - Method in class edu.claflin.finder.algo.jungutils.UndirectedSparseGraph

ALGO - edu.claflin.finder.log.LogType

Algorithm - Class in edu.claflin.finder.algo

Abstraction of the algorithm classes used for finding subgraphs.

Algorithm(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.Algorithm

Public Constructor for creating an Algorithm.

Algorithm.GraphSortOrder - Enum in edu.claflin.finder.algo

algorithms - Variable in class edu.claflin.finder.algo.Bundle

The Algorithm array containing the algorithms to process graphs with.

allow_duplicates - Variable in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

allows_duplicates() - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

ALWAYS_FALSE - edu.claflin.finder.algo.jungutils.Predicates.ObjectPredicate

ALWAYS_TRUE - edu.claflin.finder.algo.jungutils.Predicates.ObjectPredicate

alwaysFalse() - Static method in class edu.claflin.finder.algo.jungutils.Predicates

alwaysTrue() - Static method in class edu.claflin.finder.algo.jungutils.Predicates

and(Predicate<? super T>...) - Static method in class edu.claflin.finder.algo.jungutils.Predicates

and(Predicate<? super T>, Predicate<? super T>) - Static method in class edu.claflin.finder.algo.jungutils.Predicates

and(Iterable<? extends Predicate<? super T>>) - Static method in class edu.claflin.finder.algo.jungutils.Predicates

AndPredicate(List<? extends Predicate<? super T>>) - Constructor for class edu.claflin.finder.algo.jungutils.Predicates.AndPredicate

apply(A) - Method in class edu.claflin.finder.algo.jungutils.Functions.FunctionComposition

apply(A) - Method in class edu.claflin.finder.algo.jungutils.Predicates.CompositionPredicate

apply(Graph<V, E>) - Method in class edu.claflin.finder.algo.jungutils.EdgeBetweennessClusterer

Finds the set of clusters which have the strongest "community structure".

apply(Graph<V, E>) - Method in class edu.claflin.finder.algo.jungutils.WeakComponentClusterer

Extracts the weak components from a graph.

apply(F) - Method in interface edu.claflin.finder.algo.jungutils.Function

apply(CharSequence) - Method in class edu.claflin.finder.algo.jungutils.Predicates.ContainsPatternPredicate

apply(Class<?>) - Method in class edu.claflin.finder.algo.jungutils.Predicates.SubtypeOfPredicate

apply(Object) - Method in class edu.claflin.finder.algo.jungutils.Functions.ConstantFunction

apply(Object) - Method in enum edu.claflin.finder.algo.jungutils.Functions.IdentityFunction

apply(Object) - Method in class edu.claflin.finder.algo.jungutils.Functions.SupplierFunction

apply(Object) - Method in enum edu.claflin.finder.algo.jungutils.Functions.ToStringFunction

apply(Object) - Method in class edu.claflin.finder.algo.jungutils.Predicates.InstanceOfPredicate

apply(K) - Method in class edu.claflin.finder.algo.jungutils.Functions.ForMapWithDefault

apply(K) - Method in class edu.claflin.finder.algo.jungutils.Functions.FunctionForMapNoDefault

apply(T) - Method in class edu.claflin.finder.algo.jungutils.Functions.PredicateFunction

apply(T) - Method in interface edu.claflin.finder.algo.jungutils.Predicate

apply(T) - Method in class edu.claflin.finder.algo.jungutils.Predicates.AndPredicate

apply(T) - Method in class edu.claflin.finder.algo.jungutils.Predicates.InPredicate

apply(T) - Method in class edu.claflin.finder.algo.jungutils.Predicates.IsEqualToPredicate

apply(T) - Method in class edu.claflin.finder.algo.jungutils.Predicates.NotPredicate

apply(T) - Method in class edu.claflin.finder.algo.jungutils.Predicates.OrPredicate

args - Variable in class edu.claflin.finder.algo.Algorithm

The ArgumentsBundle object holding arguments for the algorithm.

ArgumentsBundle - Class in edu.claflin.finder.algo

Used to supply arguments to Algorithms in a generalized manner.

ArgumentsBundle() - Constructor for class edu.claflin.finder.algo.ArgumentsBundle

Constructs the ArgumentsBundle.

ArgumentsBundle.COMMON_ARGS - Enum in edu.claflin.finder.algo

An enumeration containing common arguments used by the program.

ascending - Variable in class edu.claflin.finder.logic.comp.EdgeWeightComparator

Indicates if the comparator should sort elements in ascending order.

ASCENDING - edu.claflin.finder.algo.Algorithm.GraphSortOrder

asList() - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

asList(Predicate<? super T>, Predicate<? super T>) - Static method in class edu.claflin.finder.algo.jungutils.Predicates

asList(List<T>, TreeNode<T>) - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

assembleMap(List<CygrouperEdge>, Map) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler

assmbleNodes(List<CygrouperEdge>, Map) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler

AVERAGE_WEIGHT - edu.claflin.finder.algo.Algorithm.GraphSortOrder

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